PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 82aa    MW: 9386.5 Da    PI: 9.894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14942.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-081357344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +++ +a +++ ++   +W ++ar +g +++++++k ++
        PK14942.1 13 SWTAMQNKQFERALALYDKDtpdRWLKVARAVGGNKSPEEVKRHY 57
                     7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.004965IPR017884SANT domain
SMARTSM007174.2E-71063IPR001005SANT/Myb domain
SuperFamilySSF466892.87E-111269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-41367IPR009057Homeodomain-like
PfamPF002494.9E-61357IPR001005SANT/Myb domain
CDDcd001679.81E-51457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSLRSSS SSSWTAMQNK QFERALALYD KDTPDRWLKV ARAVGGNKSP EEVKRHYEIL  60
EEDIKHIESG KIPFPNYRSS SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33981677RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085932.12e-38PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS34e-34RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A067K3A42e-38A0A067K3A4_JATCU; Uncharacterized protein
STRINGGSMUA_Achr2P22930_0011e-37(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-31RAD-like 1